[ensembl-dev] recalculated BLAST results

[Matthieu Muffato]

Dear Inti

The comparative genomics team computes all-vs-all blastb for the Ensembl 
and UniProt (SwissProt + TREMBL) proteins. I believe this partly covers 
the NCBI nr protein database.
However, we only store the e-values, and the data is held internally and 
not released. Please let us know if you are interested in a dump of this 
table.

Best regards,
Matthieu

On 29/10/13 22:34, Inti pedroso wrote:
> Dear,
> Are there available pre-calculated BLAST (or other sequence comparison software) searches results for any species on Ensembl against the NCBI nr database? If there are, how can I access this results in bulk or programatically.
>
> BW,
> Inti Pedroso

-- 
Matthieu Muffato, Ph.D.
Ensembl Developer and Ensembl Compara Manager
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus, Hinxton
Cambridge, CB10 1SD, United Kingdom