[ensembl-dev] ensembl ftp-server time outs when connecting from USA West
Stephen Searle
searle at sanger.ac.uk
Mon Oct 28 13:35:13 GMT 2013
Hi Jan
Have you tried rsync. Info on using it is here:
http://www.ensembl.org/info/data/ftp/rsync.html
Regards
Steve
On 26 Oct 2013, at 22:55, Jan Vogel <jan.vogel at gmail.com> wrote:
>
> Hello Ensembl,
>
> I'm trying to download some data (variation + core ) from the Ensembl FTP site but I get time outs when trying to download the compressed_genotype_var.txt.gz
> file.
>
> Is anyone else experiencing problems ? I'm connecting to ftp://ftp.ensembl.org/pub/current_mysql/
>
> The download speed is generally pretty slow - any chance to hook up a mirror on the amazon cloud for the guys out here in the west of the US ?
> I also tried to fire up an AWS image in the Amazon cloud as I was hoping to 'ssh onto the machine and download the data from there - no success either.
>
> Thanks,
>
> Jan Vogel
>
>
>
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30828838554 (29G) remaining
>
> 18% [++++++++++++++++++++++++++++=> ] 6,751,368,500 --.-K/s in 74m 58s
>
> 2013-10-25 13:46:00 (77.3 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
>
> --2013-10-25 14:01:10-- ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
> (try:18) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done. ==> PWD ... done.
> ==> TYPE I ... done. ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done. ==> REST 6751368500 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30472629214 (28G) remaining
>
> 19% [++++++++++++++++++++++++++++++> ] 7,114,223,760 --.-K/s in 74m 58s
>
> 2013-10-25 15:16:10 (78.8 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
>
> --2013-10-25 15:31:20-- ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
> (try:19) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done. ==> PWD ... done.
> ==> TYPE I ... done. ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done. ==> REST 7114223760 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30109773954 (28G) remaining
>
> 20% [+++++++++++++++++++++++++++++++=> ] 7,497,116,060 --.-K/s in 75m 0s
>
> 2013-10-25 16:46:22 (83.1 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
>
> --2013-10-25 17:01:32-- ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
> (try:20) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done. ==> PWD ... done.
> ==> TYPE I ... done. ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done. ==> REST 7497116060 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 29726881654 (28G) remaining
>
> 21% [+++++++++++++++++++++++++++++++++=> ] 7,868,484,580 --.-K/s in 74m 59s
>
> 2013-10-25 18:16:34 (80.6 KB/s) - Data connection: Connection timed out; Control connection closed.
> Giving up.
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