[ensembl-dev] ensembl ftp-server time outs when connecting from USA West

Stephen Searle searle at sanger.ac.uk
Mon Oct 28 13:35:13 GMT 2013


Hi Jan

Have you tried rsync. Info on using it is here:

http://www.ensembl.org/info/data/ftp/rsync.html

Regards

Steve

On 26 Oct 2013, at 22:55, Jan Vogel <jan.vogel at gmail.com> wrote:

> 
> Hello Ensembl, 
> 
> I'm trying to download some data (variation + core ) from the Ensembl FTP site but I get time outs when trying to download the compressed_genotype_var.txt.gz
> file. 
> 
> Is anyone else experiencing problems ? I'm connecting  to ftp://ftp.ensembl.org/pub/current_mysql/
> 
> The download speed is generally pretty slow - any chance to hook up a mirror on the amazon cloud for the guys out here in the west of the US ? 
> I also tried to fire up an AWS image in the Amazon cloud as I was hoping to 'ssh onto the machine and download the data from there  - no success either. 
> 
> Thanks,
> 
>    Jan Vogel 
> 
> 
> 
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30828838554 (29G) remaining
> 
> 18% [++++++++++++++++++++++++++++=>                                                                                                                                        ] 6,751,368,500 --.-K/s   in 74m 58s
> 
> 2013-10-25 13:46:00 (77.3 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
> 
> --2013-10-25 14:01:10--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
>  (try:18) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done.    ==> PWD ... done.
> ==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done.    ==> REST 6751368500 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30472629214 (28G) remaining
> 
> 19% [++++++++++++++++++++++++++++++>                                                                                                                                       ] 7,114,223,760 --.-K/s   in 74m 58s
> 
> 2013-10-25 15:16:10 (78.8 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
> 
> --2013-10-25 15:31:20--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
>  (try:19) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done.    ==> PWD ... done.
> ==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done.    ==> REST 7114223760 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 30109773954 (28G) remaining
> 
> 20% [+++++++++++++++++++++++++++++++=>                                                                                                                                     ] 7,497,116,060 --.-K/s   in 75m 0s
> 
> 2013-10-25 16:46:22 (83.1 KB/s) - Data connection: Connection timed out; Control connection closed.
> Retrying.
> 
> --2013-10-25 17:01:32--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
>  (try:20) => `compressed_genotype_var.txt.gz.1'
> Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
> Logging in as anonymous ... Logged in!
> ==> SYST ... done.    ==> PWD ... done.
> ==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
> ==> SIZE compressed_genotype_var.txt.gz ... 37223997714
> ==> PASV ... done.    ==> REST 7497116060 ... done.
> ==> RETR compressed_genotype_var.txt.gz ... done.
> Length: 37223997714 (35G), 29726881654 (28G) remaining
> 
> 21% [+++++++++++++++++++++++++++++++++=>                                                                                                                                   ] 7,868,484,580 --.-K/s   in 74m 59s
> 
> 2013-10-25 18:16:34 (80.6 KB/s) - Data connection: Connection timed out; Control connection closed.
> Giving up.
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20131028/7fcc2331/attachment.html>


More information about the Dev mailing list