[ensembl-dev] ensembl ftp-server time outs when connecting from USA West

Jan Vogel jan.vogel at gmail.com
Sat Oct 26 22:55:25 BST 2013


Hello Ensembl, 

I'm trying to download some data (variation + core ) from the Ensembl FTP site but I get time outs when trying to download the compressed_genotype_var.txt.gz
file. 

Is anyone else experiencing problems ? I'm connecting  to ftp://ftp.ensembl.org/pub/current_mysql/

The download speed is generally pretty slow - any chance to hook up a mirror on the amazon cloud for the guys out here in the west of the US ? 
I also tried to fire up an AWS image in the Amazon cloud as I was hoping to 'ssh onto the machine and download the data from there  - no success either. 

Thanks,

   Jan Vogel 



==> RETR compressed_genotype_var.txt.gz ... done.
Length: 37223997714 (35G), 30828838554 (29G) remaining

18% [++++++++++++++++++++++++++++=>                                                                                                                                        ] 6,751,368,500 --.-K/s   in 74m 58s

2013-10-25 13:46:00 (77.3 KB/s) - Data connection: Connection timed out; Control connection closed.
Retrying.

--2013-10-25 14:01:10--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
 (try:18) => `compressed_genotype_var.txt.gz.1'
Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
==> SIZE compressed_genotype_var.txt.gz ... 37223997714
==> PASV ... done.    ==> REST 6751368500 ... done.
==> RETR compressed_genotype_var.txt.gz ... done.
Length: 37223997714 (35G), 30472629214 (28G) remaining

19% [++++++++++++++++++++++++++++++>                                                                                                                                       ] 7,114,223,760 --.-K/s   in 74m 58s

2013-10-25 15:16:10 (78.8 KB/s) - Data connection: Connection timed out; Control connection closed.
Retrying.

--2013-10-25 15:31:20--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
 (try:19) => `compressed_genotype_var.txt.gz.1'
Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
==> SIZE compressed_genotype_var.txt.gz ... 37223997714
==> PASV ... done.    ==> REST 7114223760 ... done.
==> RETR compressed_genotype_var.txt.gz ... done.
Length: 37223997714 (35G), 30109773954 (28G) remaining

20% [+++++++++++++++++++++++++++++++=>                                                                                                                                     ] 7,497,116,060 --.-K/s   in 75m 0s

2013-10-25 16:46:22 (83.1 KB/s) - Data connection: Connection timed out; Control connection closed.
Retrying.

--2013-10-25 17:01:32--  ftp://ftp.ensembl.org/pub/current_mysql/homo_sapiens_variation_73_37/compressed_genotype_var.txt.gz
 (try:20) => `compressed_genotype_var.txt.gz.1'
Connecting to ftp.ensembl.org|193.62.203.85|:21... connected.
Logging in as anonymous ... Logged in!
==> SYST ... done.    ==> PWD ... done.
==> TYPE I ... done.  ==> CWD /pub/current_mysql/homo_sapiens_variation_73_37 ... done.
==> SIZE compressed_genotype_var.txt.gz ... 37223997714
==> PASV ... done.    ==> REST 7497116060 ... done.
==> RETR compressed_genotype_var.txt.gz ... done.
Length: 37223997714 (35G), 29726881654 (28G) remaining

21% [+++++++++++++++++++++++++++++++++=>                                                                                                                                   ] 7,868,484,580 --.-K/s   in 74m 59s

2013-10-25 18:16:34 (80.6 KB/s) - Data connection: Connection timed out; Control connection closed.
Giving up.
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