[ensembl-dev] Fetching GeneTrees tutorial

[Deyan Peychev]

Thank you Matthieu,

this info is very useful for me.
I really enjoy using COMPARA!

regards,
Deyan


On 10/23/2013 11:04 AM, Matthieu Muffato wrote:
> Dear Deyan,
>
> The tutorial is indeed missing information about the gene part, but we 
> make available the materials that we use in the API workshops, and 
> they cover the gene trees.
> You can find in ensembl-compara/docs/workshop the presentations and 
> the exercises and their solutions. The README file also gives links to 
> more detailed descriptions of the exercises.
>
> We'll update the tutorial for the next release, due in December.
>
> Hope this helps,
> Matthieu
>
> On 21/10/13 14:12, Deyan Peychev wrote:
>> Dear developers,
>> I'm new in COMPARA API and I'm trying to fetch gene trees and perform
>> some filtering to extract subset of them using Perl API.
>> Looking at tutorial
>> http://www.ensembl.org/info/docs/api/compara/compara_tutorial.html ,
>> I can't find any examples how to use GeneTreeAdaptor to fetch GeneTree
>> objects.
>> Tell me please where to find more about these objects and how to use
>> them. I have a look at the documentation, but it is so huge and
>> difficult to me to get started with some basic functionality to fetch
>> tree subsets and to do something with them.
>>
>> Best regards,
>> Deyan Peychev
>
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