[ensembl-dev] Fetching GeneTrees tutorial

[Matthieu Muffato]

Dear Deyan,

The tutorial is indeed missing information about the gene part, but we 
make available the materials that we use in the API workshops, and they 
cover the gene trees.
You can find in ensembl-compara/docs/workshop the presentations and the 
exercises and their solutions. The README file also gives links to more 
detailed descriptions of the exercises.

We'll update the tutorial for the next release, due in December.

Hope this helps,
Matthieu

On 21/10/13 14:12, Deyan Peychev wrote:
> Dear developers,
> I'm new in COMPARA API and I'm trying to fetch gene trees and perform
> some filtering to extract subset of them using Perl API.
> Looking at tutorial
> http://www.ensembl.org/info/docs/api/compara/compara_tutorial.html ,
> I can't find any examples how to use GeneTreeAdaptor to fetch GeneTree
> objects.
> Tell me please where to find more about these objects and how to use
> them. I have a look at the documentation, but it is so huge and
> difficult to me to get started with some basic functionality to fetch
> tree subsets and to do something with them.
>
> Best regards,
> Deyan Peychev