[ensembl-dev] Universal URL for Ensembl Linkouts?

Jay Humphrey jhumphre at ebi.ac.uk
Fri Oct 25 10:34:00 BST 2013


URLs specific to IDs for peptides, transcripts, and gene trees may also 
be used following the examples here:
http://ensemblgenomes.org/info/data_linking

On 25/10/2013 09:31, ek wrote:
> please note the redirect only works for unique identifiers
>
> some species have the same id for gene and transcript
> in this case the users are redirected to a search result page, e.g
> http://www.ensemblgenomes.org/id/F53H8.4
>
> if you are only interested in genes, you would be better off using the 
> gene specific url, e.g
> http://www.ensemblgenomes.org/id-gene/F53H8.4
>
>
>
>
> On 2013-10-25 00:44, Alexander Pico wrote:
>> It works! Thanks!
>>  - Alex
>>
>> On Oct 24, 2013, at 1:50 AM, ek <ek at ebi.ac.uk> wrote:
>>
>>> try
>>>
>>> http://ensemblgenomes.org/id/$id
>>>
>>> regards
>>>
>>> Eugene
>>>
>>> On 2013-10-24 00:18, Alexander Pico wrote:
>>>> The url patterns for getting to specific gene pages used to be
>>>> species-specific. Thankfully, the returned to being generic, such that
>>>> this pattern works with human, mouse and many other Ensembl
>>>> identifiers:
>>>> http://www.ensembl.org/id/ [1]$ID
>>>> But, there are still specific url patters for plants, bacteria and
>>>> fungi… as far as I can tell. These IDs have to paired with one of the
>>>> following:
>>>> http://bacteria.ensembl.org/id/ [2]$ID
>>>> http://plants.ensembl.org/id/ [3]$ID
>>>> http://fungi.ensembl.org/id/ [4]$ID
>>>> Ideally, there would be a single pattern that could accept and
>>>> redirect to the right pattern or page for ANY valid Ensembl
>>>> identifier. Does this exist? Any plans to host one? Any common
>>>> workarounds?
>>>> Thanks!
>>>> - Alex
>>>> Links:
>>>> ------
>>>> [1] http://www.ensembl.org/id/
>>>> [2] http://bacteria.ensembl.org/id/
>>>> [3] http://plants.ensembl.org/id/
>>>> [4] http://fungi.ensembl.org/id/
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>>
>>
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>
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