[ensembl-dev] IPI ID to ENSP via API?

[Andy Yates]

Hi,

We removed IPI from our Xref sources 8 months ago as the resource was closed September 2011. There is no way of retrieving IPI links from the API. One possible alternative is to use UniParc. A large number of Ensembl species are imported into UniParc and would let you find those ENSPs whose sequence was identical to an IPI record.

Hope this helps,

Andy

------------
Andrew Yates - Ensembl Core Software Project Leader
European Bioinformatics Institute (EMBL-EBI)
European Molecular Biology Laboratory
Wellcome Trust Genome Campus
Hinxton
Cambridge CB10 1SD
Tel: +44-(0)1223-492538
Fax: +44-(0)1223-494468
http://www.ensembl.org/

On 23 Oct 2013, at 17:05, Giuseppe Gallone <giuseppe.gallone at dpag.ox.ac.uk> wrote:

> Hi
> 
> I was wondering what's currently the best way to obtain a list of ENSP protein IDs given a list of IPI IDs via the API.
> 
> Best
> Giuseppe
> 
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