[ensembl-dev] unable to start Ensembl server without httpd -X

CLARK, MATTHEW MATTHEW.CLARK at pfizer.com
Thu May 30 16:58:01 BST 2013


Hi all,

I've set up an Ensembl mirror and it will run seemingly fine if run with the -X debug mode on httpd (apache2)

But running without this forced setting leads to httpd closeing as soon as perl.startup is finished. Before printing to the log file (with -e debug on)

I have turned on these debug flags:
General errors, Drawing code, Sd autoloader, Handler errors, Long process, Perl profiler, Tree dumps, Referer, Magic messages, Javascript debug, Memcached, External commands, Wizard messages, Verbose startup.

There are no errors thrown  don't get any appant fatal errors but it does give three warnings from the debug flags:
UNDEF ON DATAFILE_BASE_PATH [Homo_sapiens]. Called from /opt/Ensembl/modules/EnsEMBL/Web/SpeciesDefs.pm line 309
UNDEF ON ENSEMBL_MEMCACHED [Homo_sapiens]. Called from /opt/Ensembl/conf/perl.startup line 153
UNDEF ON LUCENE_ENDPOINT [Homo_sapiens]. Called from /opt/Ensembl/conf/perl.startup line 239

And one wanrning directly from the code
ENSEMBL_BLAST_METHODS config unavailable at /opt/Ensembl/modules/EnsEMBL/Web/BlastView/BlastDefs.pm line 66.

These warnings don't seem to be too troubling  since i'm not using any file based data, Memcashed, lucene or blast functionality.

Are any of these features required to launch the mirror or is it something more fundamentally wrong with my apache/ensemble set up?

Many Thanks,

Matt
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