[ensembl-dev] dbSNP137 question

Denise Carvalho-Silva denise at ebi.ac.uk
Thu May 23 17:36:57 BST 2013


Dear Duarte,

The reason for the discrepancy is that in Ensembl we report the alleles always in the forward strand, where in dbSNP they report them as they were submitted by the submitters.

In this case the have been reported in reverse orientation.



Regards,
Denise


On 23 May 2013, at 17:25, Duarte Molha wrote:

> Dear developers
> 
> I was wondering if someone could explain to me the difference I see in this RSid
> rs4970378    
> in the Ensembl database and in the NCBI snp database
> 
> 
> http://www.ensembl.org/Homo_sapiens/Variation/Context?r=1:883125-884125;source=dbSNP;v=rs4970378;vdb=variation;vf=3859232
> 
> http://www.ncbi.nlm.nih.gov/projects/SNP/snp_ref.cgi?rs=4970378
> 
> in NCBI the alleles are C/T
> ln Ensembl they are AG
> 
> Why the discrepancy?
> 
> thanks
> 
> Duarte
> 
> =========================
>      Duarte Miguel Paulo Molha      
>          http://about.me/duarte         
> =========================
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