[ensembl-dev] VEP check existing.

Duarte Molha duartemolha at gmail.com
Wed May 22 17:50:12 BST 2013


In that case the field remains empty or with a dash of the fields is part
of the main annotation fields (the default behavior)
On 22 May 2013 16:45, "Guillermo Marco Puche" <
guillermo.marco at sistemasgenomicos.com> wrote:

>  In case it doesn't exist what's the behavior then?
>
> On 05/22/2013 05:20 PM, Duarte Molha wrote:
>
> It does exactly that ... it checks Ensembl to find out if the variation
> you are annotation has already been added to the database (ie has a RS id
> identifier)
>
>  =========================
>      Duarte Miguel Paulo Molha
>           http://about.me/duarte
> =========================
>
>
> On Wed, May 22, 2013 at 4:09 PM, Guillermo Marco Puche <
> guillermo.marco at sistemasgenomicos.com> wrote:
>
>>  Hello,
>>
>> I'm a bit in doubt with the follow VEP option, --check_existing.
>>
>> I'm not really sure what it does. I've read the description like a
>> hundred times and i'm still confused. If someone could explain this in
>> detail it would be awesome.
>>
>>
>> Thank you.
>>
>> Best regards,
>> Guillermo.
>>
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>
>
>
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