[ensembl-dev] No Individual parsing in when Feature type is Motif?

Will McLaren wm2 at ebi.ac.uk
Tue May 21 12:24:31 BST 2013


Hi Duarte,

Thanks, another bug squashed! This was not intended behaviour.

Fixed on head and branch 71.

Cheers

Will


On 21 May 2013 11:59, Duarte Molha <duartemolha at gmail.com> wrote:

>
> Dear Developers
>
> I have been creating a parsing script for the output VEP annotation and
> was having some issues that I just now determined what where the cause.
>
> in my output annotation file I use the --individual all flag to output to
> each line the individuals parsed from the VCF input file.
>
> However, when the annotation Feature type is a MotifFeature, the IND field
> is not output.
>
> Is this an expected behaviour? If so, can to tell me how to force the
> "IND" field to be included?
>
> Best regards
>
> Duarte
>
>
> =========================
>      Duarte Miguel Paulo Molha
>          http://about.me/duarte
> =========================
>
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