[ensembl-dev] invalid vcf output

[Will McLaren]

I think I'll try it with CGI escape and unescape, since as a rule I try and
avoid using any non-core Perl modules in the VEP in order to make it easier
to install.

Cheers

Will


On 22 July 2013 21:27, Reece Hart <reece at harts.net> wrote:

> On Mon, Jul 22, 2013 at 1:26 AM, Will McLaren <wm2 at ebi.ac.uk> wrote:
>
>> I'm not sure what would be best to do here - I could pick a character to
>> swap it to, or perhaps something like "eq" instead?
>>
>> Do any other VEP users have a preference?
>>
>
> I think a standard encoding mechanism is preferable to an ensembl-specific
> one. How about url encoding (e.g., %3D)? I think URI::Escape should do it.
> Probably also worth noting in the VCF header that CSQ is URI-escaped.
>
> Thanks Will!
>
> -Reece
>
>
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