[ensembl-dev] invalid vcf output

[Reece Hart]

On Mon, Jul 22, 2013 at 1:26 AM, Will McLaren <wm2 at ebi.ac.uk> wrote:

> I'm not sure what would be best to do here - I could pick a character to
> swap it to, or perhaps something like "eq" instead?
>
> Do any other VEP users have a preference?
>

I think a standard encoding mechanism is preferable to an ensembl-specific
one. How about url encoding (e.g., %3D)? I think URI::Escape should do it.
Probably also worth noting in the VCF header that CSQ is URI-escaped.

Thanks Will!

-Reece
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20130722/4a3abdd7/attachment.html>