[ensembl-dev] COMPARA get orthologous genes

Denise Carvalho-Silva denise at ebi.ac.uk
Fri Jul 19 17:48:44 BST 2013


Hi Nathalie,

The object adaptor is HomologyAdaptor, which has a fetching method called
fetch_all_by_Member()

First you will fetch the GeneMember and then you can get the homologies
where the member is involved.

More information and examples can be found below:

http://www.ensembl.org/info/docs/api/compara/compara_tutorial.html

(under ´Homology Objects´)

Hope it helps.

Cheers,
Denise

> Hi, I have a human ensembl gene object and want to fetch the mouse
> orthologous gene, what is the best method for this please?
> thanks
> Nathalie
>
>
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