[ensembl-dev] COMPARA get orthologous genes

[Matthieu Muffato]

Hi Nathalie

You may also consider using fetch_all_by_Member_paired_species() to 
directly get the homologues in a given species

Best,
Matthieu

On 19/07/13 17:48, Denise Carvalho-Silva wrote:
> Hi Nathalie,
>
> The object adaptor is HomologyAdaptor, which has a fetching method called
> fetch_all_by_Member()
>
> First you will fetch the GeneMember and then you can get the homologies
> where the member is involved.
>
> More information and examples can be found below:
>
> http://www.ensembl.org/info/docs/api/compara/compara_tutorial.html
>
> (under ´Homology Objects´)
>
> Hope it helps.
>
> Cheers,
> Denise
>
>> Hi, I have a human ensembl gene object and want to fetch the mouse
>> orthologous gene, what is the best method for this please?
>> thanks
>> Nathalie