[ensembl-dev] cannot find Bio/EnsEMBL/GlyphSet/stranded_contig.pm

ek ek at ebi.ac.uk
Thu Jan 10 21:12:31 GMT 2013


in
eg-plugins/plants/modules/EnsEMBL/Web/ImageConfig/MultiBottom.pm


replace stranded_contig with contig

I'll put the fix to the eg code tomorrow

On 2013-01-10 20:22, Sharon Wei wrote:
> Hi All,
>
> On our ensembl genome browser server, there is an error message
> complaining a missing module.
>
> "Sanger Graphics Root: Can't locate
> Bio/EnsEMBL/GlyphSet/stranded_contig.pm in @INC (@INC contains:
> /usr/local/gramene/lib/perl
> /usr/local/ensembl-live/gramene-live/ensembl-plugins/gramene/modules
> /usr/local/ensembl-live/public-plugins/mart/modules
> /usr/local/ensembl-live/eg-plugins/plants/modules
> /usr/local/ensembl-live/eg-plugins/common/modules
> /usr/local/ensembl-live/ensembl/modules
> /usr/local/ensembl-live/ensembl-compara/modules
> /usr/local/ensembl-live/ensembl-draw/modules
> /usr/local/ensembl-live/ensembl-variation/modules
> /usr/local/ensembl-live/ensembl-functgenomics/modules
> /usr/local/ensembl-live/ensembl-external/modules
> /usr/local/ensembl-live/biomart-perl/lib
> /usr/local/ensembl-live/bioperl-live /usr/local/ensembl-live/modules
> /usr/local/ensembl-live/conf/
> /usr/local/lib/perl5/site_perl/5.14.0/x86_64-linux
> /usr/local/lib/perl5/site_perl/5.14.0
> /usr/local/lib/perl5/5.14.0/x86_64-linux /usr/local/lib/perl5/5.14.0
> /usr/local/lib/perl5/site_perl/5.12.2
> /usr/local/lib/perl5/site_perl/5.8.8 /usr/local/lib/perl5/site_perl .
> /usr/local/apache2) at (eval 1161) line 2."
>
> I cannot find it any where not in ensembl-draw nor in the eg-plugins.
>
> Could anyone help?
>
> Thanks.
>
>
> Sharon




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