[ensembl-dev] cannot find Bio/EnsEMBL/GlyphSet/stranded_contig.pm

Sharon Wei weix at cshl.edu
Thu Jan 10 20:22:33 GMT 2013


Hi All,

On our ensembl genome browser server, there is an error message 
complaining a missing module.

"Sanger Graphics Root: Can't locate 
Bio/EnsEMBL/GlyphSet/stranded_contig.pm in @INC (@INC contains: 
/usr/local/gramene/lib/perl 
/usr/local/ensembl-live/gramene-live/ensembl-plugins/gramene/modules 
/usr/local/ensembl-live/public-plugins/mart/modules 
/usr/local/ensembl-live/eg-plugins/plants/modules 
/usr/local/ensembl-live/eg-plugins/common/modules 
/usr/local/ensembl-live/ensembl/modules 
/usr/local/ensembl-live/ensembl-compara/modules 
/usr/local/ensembl-live/ensembl-draw/modules 
/usr/local/ensembl-live/ensembl-variation/modules 
/usr/local/ensembl-live/ensembl-functgenomics/modules 
/usr/local/ensembl-live/ensembl-external/modules 
/usr/local/ensembl-live/biomart-perl/lib 
/usr/local/ensembl-live/bioperl-live /usr/local/ensembl-live/modules 
/usr/local/ensembl-live/conf/ 
/usr/local/lib/perl5/site_perl/5.14.0/x86_64-linux 
/usr/local/lib/perl5/site_perl/5.14.0 
/usr/local/lib/perl5/5.14.0/x86_64-linux /usr/local/lib/perl5/5.14.0 
/usr/local/lib/perl5/site_perl/5.12.2 
/usr/local/lib/perl5/site_perl/5.8.8 /usr/local/lib/perl5/site_perl . 
/usr/local/apache2) at (eval 1161) line 2."

I cannot find it any where not in ensembl-draw nor in the eg-plugins.

Could anyone help?

Thanks.


Sharon






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