[ensembl-dev] VEP script Warnings

[Duarte Molha]

Perfect. Thanks John

=========================
     Duarte Miguel Paulo Molha
         http://about.me/duarte
=========================


On Thu, Dec 12, 2013 at 4:02 PM, John Marshall <jm18 at sanger.ac.uk> wrote:

> On 12 Dec 2013, at 10:29, Will McLaren wrote:
> > These are not typos; Eclipse warns because VEP is setting a
> package-specific variable and Eclipse can't see that it is used within the
> relevant package - it only sees within the current open file. I have the
> same warnings in my IDE.
>
> There's a number of possible workarounds, but perhaps the least obtuse
> would be to temporarily suppress this warning in these two places:
>
>     {
>         no warnings 'once';
>         # copy to Slice for offline sequence fetching
>         $Bio::EnsEMBL::Slice::config = $config;
>     }
>
> Cheers,
>
>     John
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info:
> http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20131212/a853b450/attachment.html>