[ensembl-dev] Fwd: VEP script installation in CloudBioLinux

[Will McLaren]

Hi Michael,

Just a note to say this feature made it into 74, you can now run e.g.:

perl INSTALL.pl -a acf -s homo_sapiens,mus_musculus

to non-interactively install the API and the cache and FASTA files for
human and mouse. Add -q to silence the script.

The string after -a corresponds to whether you want to install the (a) API
(c) cache file (f) fasta file.

Use --help to see all of the options available.

Regards

Will McLaren
Ensembl Variation


On 11 September 2013 16:48, Michael Heuer <heuermh at gmail.com> wrote:

> Hello,
>
> I would like to have the variation effect predictor (VEP) script
> available in the CloudBioLinux distribution
>
> http://cloudbiolinux.org
>
> VEP is currently available as a custom build but we do some mucking
> about with the installation script with sed to deal with the
> interactivity
>
> https://github.com/chapmanb/cloudbiolinux/pull/116
>
> Would it be possible for someone from the dev team to weigh in on this
> issue?
>
> Thank you,
>
>    michael
>
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