[ensembl-dev] Typo in VEP documentation

[Will McLaren]

Hi Duarte,

It has been fixed in the code, I'm just waiting on it getting pushed to the
live site.

Thanks

Will


On 9 December 2013 21:42, Denise Carvalho-Silva <denise at ebi.ac.uk> wrote:

> Hi Duarte,
>
> Thanks for bringing this to our attention and sorry for the late reply.
>
> We will fix this as soon as possible to have the correct name for the
> human assembly.
>
> Kind regards,
> Denise
>
> > Hi Guys
> >
> > Anyone seen this report? I am sure it is not very important but it is
> > bound
> > to cause issues for some users.
> >
> > Best regards
> >
> > Duarte
> >
> >
> > =========================
> >      Duarte Miguel Paulo Molha
> >          http://about.me/duarte
> > =========================
> >
> >
> > On Fri, Dec 6, 2013 at 1:41 PM, Duarte Molha <Duarte.Molha at ogt.com>
> wrote:
> >
> >> Dear developers
> >>
> >>
> >>
> >> I found a typo in the documentation of VEP at:
> >> http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre
> >>
> >>
> >>
> >> wget
> >>
> ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
> >>
> >> gzip -d Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
> >>
> >> perl variant_effect_predictor.pl -i input.vcf --offline --hgvs --fasta
> >> Homo_sapiens.GRCh27.74.dna.primary_assembly.fa
> >>
> >>
> >>
> >> I believe the fasta file should be :
> >> Homo_sapiens.GRCh37.74.dna.primary_assembly.fa.gz
> >>
> >>
> >>
> >>
> >> Best regards
> >>
> >>
> >>
> >> Duarte Molha
> >>
> >>
> >>
> >> _______________________________________________
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> >>
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>
>
> --
> Denise Carvalho-Silva, PhD
> Ensembl Outreach Officer
> EMBL-EBI
> Hinxton Cambs UK
> CB10 1SD
> www.ensembl.org | www.ensemblgenomes.org
> uk.linkedin.com/in/denisecs/
>
>
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