[ensembl-dev] Typo in VEP documentation

Duarte Molha duartemolha at gmail.com
Mon Dec 9 13:53:40 GMT 2013


Hi Guys

Anyone seen this report? I am sure it is not very important but it is bound
to cause issues for some users.

Best regards

Duarte


=========================
     Duarte Miguel Paulo Molha
         http://about.me/duarte
=========================


On Fri, Dec 6, 2013 at 1:41 PM, Duarte Molha <Duarte.Molha at ogt.com> wrote:

> Dear developers
>
>
>
> I found a typo in the documentation of VEP at:
> http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre
>
>
>
> wget ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
>
> gzip -d Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz
>
> perl variant_effect_predictor.pl -i input.vcf --offline --hgvs --fasta Homo_sapiens.GRCh27.74.dna.primary_assembly.fa
>
>
>
> I believe the fasta file should be : Homo_sapiens.GRCh37.74.dna.primary_assembly.fa.gz
>
>
>
>
> Best regards
>
>
>
> Duarte Molha
>
>
>
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