[ensembl-dev] Typo in VEP documentation

Duarte Molha Duarte.Molha at ogt.com
Fri Dec 6 13:41:31 GMT 2013


Dear developers

I found a typo in the documentation of VEP at: http://www.ensembl.org/info/docs/tools/vep/script/vep_cache.html#pre


wget ftp://ftp.ensembl.org/pub/release-74/fasta/homo_sapiens/dna/Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz

gzip -d Homo_sapiens.GRCh27.74.dna.primary_assembly.fa.gz

perl variant_effect_predictor.pl -i input.vcf --offline --hgvs --fasta Homo_sapiens.GRCh27.74.dna.primary_assembly.fa

I believe the fasta file should be : Homo_sapiens.GRCh37.74.dna.primary_assembly.fa.gz

Best regards

Duarte Molha

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20131206/cb1bc82d/attachment.html>


More information about the Dev mailing list