[ensembl-dev] Retrieving genomic sections locally from ftp downloaded files to argument those obtained via Ensembl API

[Andy Yates]

Hi Allan,

So long as you are using the non-patched files then there has been no change in these coordinates since 2009 (the release of GRCh37)

Best regards,

Andy

Andrew Yates                   Ensembl Core Software Project Leader
EMBL-EBI                       Tel: +44-(0)1223-492538
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensembl.org/

On 14 Sep 2012, at 09:14, Allan Kamau wrote:

> A few months ago I used the Ensembl API to download portions of the
> human genome. Today I would like to retrieve much longer sections of
> the human genome (from DNA fasta files obtained via ftp from ensembl)
> masking out the sections I had retrieved via the Ensembl API.
> 
> Since I will be using the same coordinates I had used via Ensembl API,
> are there any issues I should be aware of such as version changes
> between the data obtained via Ensemble (in 2012 June) and raw the DNA
> sequences I download today via the ensembl FTP site?
> 
> Allan.
> 
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