[ensembl-dev] query limit in variation API...

juha.muilu at kolumbus.fi juha.muilu at kolumbus.fi
Fri Nov 30 10:36:48 GMT 2012


Thanks Will
Actually the failure don't always happen exactly after that many calls, perhaps +/-5. It is a simple loop which used to work with the rev 68. Good to know that there are no hidden cpu etc. limits in api code/mysql.  I will investigate more.
Cheers, Juha
Will McLaren [wm2 at ebi.ac.uk] kirjoitti: 
> Hi Juha,
> 
> There is no limits if you are using the Perl API, no.
> 
> If your script repeatedly fails after 877 calls, I suspect there is
> something in the 878th which is causing it to fail - if you could let us
> know the details of that we may be able to debug.
> 
> Regards
> 
> Will McLaren
> Ensembl Variation
> 
> 
> On 24 November 2012 19:25, <juha.muilu at kolumbus.fi> wrote:
> 
> > Hi
> > Wondering if queries are limited in the latest variantion api or
> > something? My script, which used to work with the version 68, now dies
> > after 877 calls to $variation_adaptor->fetch_by_**name... Best, Juha
> >
> >
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