[ensembl-dev] query limit in variation API...
juha.muilu at kolumbus.fi
juha.muilu at kolumbus.fi
Fri Nov 30 10:36:48 GMT 2012
Thanks Will
Actually the failure don't always happen exactly after that many calls, perhaps +/-5. It is a simple loop which used to work with the rev 68. Good to know that there are no hidden cpu etc. limits in api code/mysql. I will investigate more.
Cheers, Juha
Will McLaren [wm2 at ebi.ac.uk] kirjoitti:
> Hi Juha,
>
> There is no limits if you are using the Perl API, no.
>
> If your script repeatedly fails after 877 calls, I suspect there is
> something in the 878th which is causing it to fail - if you could let us
> know the details of that we may be able to debug.
>
> Regards
>
> Will McLaren
> Ensembl Variation
>
>
> On 24 November 2012 19:25, <juha.muilu at kolumbus.fi> wrote:
>
> > Hi
> > Wondering if queries are limited in the latest variantion api or
> > something? My script, which used to work with the version 68, now dies
> > after 877 calls to $variation_adaptor->fetch_by_**name... Best, Juha
> >
> >
> > ______________________________**_________________
> > Dev mailing list Dev at ensembl.org
> > Posting guidelines and subscribe/unsubscribe info:
> > http://lists.ensembl.org/**mailman/listinfo/dev<http://lists.ensembl.org/mailman/listinfo/dev>
> > Ensembl Blog: http://www.ensembl.info/
> >
>
> _______________________________________________
> Dev mailing list Dev at ensembl.org
> Posting guidelines and subscribe/unsubscribe info: http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/
>
More information about the Dev
mailing list