[ensembl-dev] Tribolium ChLG8 missing?

[Daniel Lawson]

Dear Mark,

Thanks for letting us know. We'll investigate and get back to you about
this. If we need to take remedial action then we will try to provide
guidance as to timelines at that point.

regards
Dan


On 8 November 2012 13:37, Mark Robinson <mark.robinson at imls.uzh.ch> wrote:

> Dear Ensemblers,
>
> First of all, thank you for this great resource.  Apologies if this isn't
> the right place to post.
>
> I have been playing around with some Tribolium castaneum resources:
> http://metazoa.ensembl.org/Tribolium_castaneum/Info/StatsTable?db=core
>
> And, I've found that there are NO annotated genes on ChLG8, either in the
> scaffold viewer:
>
>
> http://metazoa.ensembl.org/Tribolium_castaneum/Location/View?r=ChLG8:9002948-9018951(no genes chr8)
>
> http://metazoa.ensembl.org/Tribolium_castaneum/Location/View?r=ChLG7:8760950-9260949(tons of genes chr7)
>
> or, in the GTF files (I checked back to the first Tcas release):
>
>
> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-16/gtf/tribolium_castaneum/Tribolium_castaneum.Tcas3.16.gtf.gz
>
> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-15/gtf/tribolium_castaneum/Tribolium_castaneum.Tcas3.15.gtf.gz
> ...
>
> ftp://ftp.ensemblgenomes.org/pub/metazoa/release-12/gtf/tribolium_castaneum/Tribolium_castaneum.Tcas3.12.gtf.gz
>
> Is this a simple error, since Beetlebase definitely has annotated genes
> there:
> http://beetlebase.org/jbrowse/index.html
>
> Any help would be greatly appreciated!  Thanks in advance.
>
>
> Best, Mark
>
>
> ----------
> Prof. Dr. Mark Robinson
> Bioinformatics
> Institute of Molecular Life Sciences
> University of Zurich
> Winterthurerstrasse 190
> 8057 Zurich
> Switzerland
>
> v: +41 44 635 4848
> f: +41 44 635 6898
> e: mark.robinson at imls.uzh.ch
> o: Y11-J-16
> w: http://tiny.cc/mrobin
>
> ----------
> http://www.fgcz.ch/Bioconductor2012
>
>
>
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-- 
Ensembl Genomes | VectorBase | i5K insect genome initiative
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