[ensembl-dev] Attaching a BedGraph, any help WBVMA
searle at sanger.ac.uk
Wed Nov 7 11:35:19 GMT 2012
It looks like the 'track' line:
track type=bedGraph name="BedGraph Format" description="BedGraph format"
visibility=full color=200,100,0 altColor=0,100,200 priority=20
is split across two lines in your file. If I make that a single line:
track type=bedGraph name="BedGraph Format" description="BedGraph
format" visibility=full color=200,100,0 altColor=0,100,200 priority=20
the file loads OK for me.
On 7 Nov 2012, at 11:25, Andrew Tikhonov wrote:
> Dear Ens-Dev
> I'm attaching a BedGraph of the following sort. However the Ensembl
> is a bit reluctant. Any idea what's happing ?
> Any help would be very much appreciated.
> browser position X:99883667-99890743
> # 300 base wide bar graph, autoScale is on by default == graphing
> # limits will dynamically change to always show full range of data
> # in viewing window, priority = 20 positions this as the second graph
> # Note, zero-relative, half-open coordinate system in use for
> bedGraph format
> track type=bedGraph name="BedGraph Format" description="BedGraph
> visibility=full color=200,100,0 altColor=0,100,200 priority=20
> X 99883667 99884983 1291.34511805323
> X 99885756 99885863 353.561349266932
> X 99887482 99887565 117.853783088977
> X 99888402 99888536 261.039536003965
> X 99888928 99889026 139.197316098987
> X 99890175 99890249 128.141167143921
> X 99890555 99890743 215.224186342204
>> Thank you. Your file uploaded successfully
>> File uploaded: TEST (BED file, Homo sapiens)
>> Region visibility=full:0-100000 does not exist.
>> None of the features in your file could be mapped to the Homo
>> sapiens genome.
>> Please check that you have selected the right species.
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