[ensembl-dev] Ensembl release 67 is out!

[Rhoda Kinsella]

Hi Beat
We are currently looking into why this has occurred but it is  
certainly a bug in our mart databases. I will respond as soon as we  
have a fix in place. Thank you for reporting this and apologies for  
any inconvenience.
Regards
Rhoda

On 19 May 2012, at 15:55, Beat Wolf wrote:

> Hi,
>
> i'm a computer scientist and not a biologist, so perhaps i missed  
> something about the DMD gene changing recently.
> I have an automated unit test for my application that uses biomart.  
> It happens to test the DMD-001 transcript of the DMD gene.
> In the 66 version of enembl, the UTR3 coordinates of the exon number  
> 79 where:
>
> 31137345
> to 31140035
> which was correct. Now with the version 67 of ensembl, the UTR3  
> region in the same exon is:
>
> 31137345 to
> 31137344
> Which can not be correct, because that means that UTR3 has a length  
> of 1. The other numbers don't match up either.
>
> Did the DMD gene change? Is the information stored differently in  
> ensembl? What values do i need to reconstruct the true UTR3 region?  
> Or is this a bug in the new ensembl version. If yes, how many other  
> genes are affected? Currently i will stay on the 66 version thanks  
> to the archives, but i have some connection issues with it, it seems  
> to be much less stable than the 67 version.
>
> Greetings
>
> Beat Wolf
>
> On Thursday 10 May 2012 10:58:58 Thomas Maurel wrote:
> The latest Ensembl update (e!67) has been released : http://www.ensembl.org/
>
> Here are some highlights:
>
> Human: The patches for the human genome assembly have been updated  
> to GRCh37.p7, Human somatic variants from COSMIC have been updated  
> to release 58 and we now provide the 1000 genomes phase 1 genotype  
> data.
>
>
> New species:  Nile tilapia (Oreochromis niloticus).
>
> New genomes: The assemblies for Pig and Squirrel have been updated.
>
> A complete list of the changes in release 67 can be found at http://www.ensembl.org/info/website/news.html
>
> For the latest news on the ensembl project visit our blog at http://www.ensembl.info/
>
> The release blog post can be viewed here : http://www.ensembl.info/blog/2012/05/10/ensembl-67-has-been-released/
>
> Best regards,
> Thomas Maurel
>
> --
> Thomas Maurel
> Bioinformatician - Ensembl Production Team
> European Bioinformatics Institute (EMBL-EBI)
> Wellcome Trust Genome Campus, Hinxton
> Cambridge - CB10 1SD - UK
>
>
>
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Rhoda Kinsella Ph.D.
Ensembl Production Project Leader,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.

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