[ensembl-dev] Biomart SIFT and PolyPhen scores

Thomas Maurel maurel at ebi.ac.uk
Thu May 17 10:12:11 BST 2012


Dear Beat,

This is a known bug in BioMart release 67 (please see here: http://www.ensembl.info/contact-us/known-bugs/).
This bug will be fixed for release 68.

Apologies for the inconvenience caused,

Best Regards,
Thomas

On 17 May 2012, at 08:08, Beat Wolf wrote:

> Hello,
> 
> i'm using biomart to get information about variants. Until recentlyi was using 
> polyphen_score and sift_score. Both of them dont seem to exist anymore in the 
> biomart API. But they do still exist in the Documentation:
> http://www.ensembl.org/info/docs/variation/predicted_data.html
> 
> I couldn't find any news that they where removed. I'm i missing something 
> (where they renamend?) or is this a problem in biomart?
> 
> Have a nice day
> 
> Beat Wolf
> 
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--
Thomas Maurel
Bioinformatician - Ensembl Production Team
European Bioinformatics Institute (EMBL-EBI)
Wellcome Trust Genome Campus, Hinxton
Cambridge - CB10 1SD - UK

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