[ensembl-dev] VEP - feature request - VCF output file as an additional output file

[Mark Aquino]

Nevermind, problem was with my LWP install. 
On May 10, 2012, at 1:34 PM, Mark Aquino wrote:

> Did anyone else have problems using the INSTALL.pl script? It calls a flush method from IO::File which doesn't exist.
> On May 10, 2012, at 12:27 PM, Duarte Molha wrote:
> 
>> I am having fun with the latest VEP. Thank you for the hard work!
>>  
>> However I would like to make a feature request... Could you make the  –VCF behaviour different?
>>  
>> It would be great if the script could output the annotation in regular tab delimited format and the –VCF flag could be used to specify a additional output filename for the same data in VCF format.
>>  
>> The VCF format is very useful and portable but for some things but it would be a headache to parse the variant annotations from the info field so it would be great it from 1 run we could get both files.
>>  
>> Cheers,
>> Duarte Molha
>>  
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> 
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