[ensembl-dev] VEP - feature request - VCF output file as an additional output file

[Mark Aquino]

Did anyone else have problems using the INSTALL.pl script? It calls a flush method from IO::File which doesn't exist.
On May 10, 2012, at 12:27 PM, Duarte Molha wrote:

> I am having fun with the latest VEP. Thank you for the hard work!
>  
> However I would like to make a feature request... Could you make the  –VCF behaviour different?
>  
> It would be great if the script could output the annotation in regular tab delimited format and the –VCF flag could be used to specify a additional output filename for the same data in VCF format.
>  
> The VCF format is very useful and portable but for some things but it would be a headache to parse the variant annotations from the info field so it would be great it from 1 run we could get both files.
>  
> Cheers,
> Duarte Molha
>  
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20120510/7a132d78/attachment.html>