[ensembl-dev] db_version in function ' fetch_by_region '
mamunur.rashid
rm8 at sanger.ac.uk
Tue May 8 12:38:17 BST 2012
Hi All,
I am trying to extract sequence information from ensembl using 2 different human genome build.
I have a two different sets of genomic locations, first one from hg19 build and second from hg18 build.
I use the following code bit
# ------------------- #
$registry->load_registry_from_db( -host => 'ensembldb.ensembl.org', -user=> 'anonymous' );
my $human_slice_adaptor = $registry->get_adaptor( $species,'Core','Slice');
my $slice = $human_slice_adaptor->fetch_by_region('chromosome', $chr_name , $start , $end , $dbversion );
my $sequence = $slice->seq();
# ------------------- #
Does anyone can give me some idea about the possible values of the " $dbversion " parameter for hg19 and hg18 build.
I have tried using GRCh37 -and NCBI36 respectively but it returns me values from current genome build anyway.
thanks in advance,
Mamun
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