[ensembl-dev] VEP changing 0 and 0.0 to '-'

Will McLaren wm2 at ebi.ac.uk
Mon Mar 5 09:42:51 GMT 2012


Hi Michael

I've fixed this on the CVS head - you will need to re-download the
script (and update the ensembl-variation API module if you are using
VCF output).

Thanks for your help spotting these things!

Will McLaren
Ensembl Variation

On 5 March 2012 00:37, Michael Yourshaw <myourshaw at ucla.edu> wrote:
> VEP 2.4 still changes zeroes to “-“.
>
> I am adding new, numerical columns to the output, and this behavior causes
> problems, including an inability to distinguish a null value (empty string)
> from an actual value of 0.
>
> Any chance this can be changed, at least as an option?
>
>
>>
> Michael Yourshaw
>
> UCLA Geffen School of Medicine
> Department of Human Genetics, Nelson Lab
> 695 Charles E Young Drive S
> Gonda 5554
>
> Los Angeles CA 90095-8348 USA
>
> myourshaw at ucla.edu
>
> 970.691.8299
>
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