[ensembl-dev] General feature 'projection' script?

[Olson, Andrew]

Hi Dan,
I have a general purpose script that I've used to map features in bulk from one assembly to another.  It operates on tab delimited files (like from mysqldump) and uses a mapping file to guide the projection.  This lets you project features on many tables and then import the new tables to another core database.  One warning though, it doesn't require the start and end coordinates of a feature to be the same distance apart, but this check can be added at about line 36 if needed.
Andrew

On Jun 27, 2012, at 1:58 PM, Dan Bolser wrote:

> Does anyone have a a 'general' (type agnostic) feature 'projection'
> script? i.e. a script that will project all features to toplevel, or
> feature type x from level y to level z in a given core database?
>
> Cheers,
> Dan.
>
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