[ensembl-dev] Condel Plugin

Koul, Sunita sunita at pathology.wustl.edu
Wed Jun 20 15:46:41 BST 2012

Thanks Michael for the response.
Please bear with me as I am little confused about the config directory
Condel.pm is under
\Bio\ensembl-variation\modules\Bio\EnsEMBL\Variation\Utils directory.
I see a Config.pm file under that besides condel.pm
There is no config directory as such.


From: Michael Yourshaw [mailto:myourshaw at ucla.edu]
Sent: Friday, June 15, 2012 5:38 PM
To: Koul, Sunita
Cc: Ensembl developers list
Subject: Re: [ensembl-dev] Condel Plugin

You need to specify some parameters for the Condel plugin

--plugin Condel,/path/to/VEP_plugins/config/Condel/config,b,2


Michael Yourshaw
UCLA Geffen School of Medicine
Department of Human Genetics, Nelson Lab
695 Charles E Young Drive S
Gonda 5554

Los Angeles CA 90095-8348 USA

myourshaw at ucla.edu<mailto:myourshaw at ucla.edu>


This message is intended only for the use of the addressee and may contain information that is PRIVILEGED and CONFIDENTIAL, and/or may contain ATTORNEY WORK PRODUCT. If you are not the intended recipient, you are hereby notified that any dissemination of this communication is strictly prohibited. If you have received this communication in error, please erase all copies of the message and its attachments and notify us immediately. Thank you.

On Jun 15, 2012, at 15:04, Koul, Sunita wrote:

I am trying to run Condel using the variant effect predictor using the following command
perl variant_effect_predictor.pl -i input.vcf --plugin Condel

I get the error
Can't locate loadable object for module Win32 in @INC (@INC contains: E:\Perl\variant_effect_predictor\Bio\bioperl-1.2.3 E:\Perl\variant_effect_predictor\Bio\ensembl\modules E:\Perl\variant_effect_predictor\Bio\ensembl-compara\modules
E:\Perl\variant_effect_predictor\Bio\ensembl-variation\modules E:\Perl\variant_effect_predictor\Bio\ensembl-functgenomics\modules E:\Perl\variant_effect_predictor\Bio\ensembl-variation\modules\Bio\EnsEMBL\Variation\Utils ---

Any idea why this is happening(I am using Windows to run this tool)


The materials in this email are private and may contain Protected Health Information. If you are not the intended recipient, be advised that any unauthorized use, disclosure, copying, distribution or the taking of any action in reliance on the contents of this information is strictly prohibited. If you have received this email in error, please immediately notify the sender via telephone or return email.

Dev mailing list    Dev at ensembl.org<mailto:Dev at ensembl.org>
List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
Ensembl Blog: http://www.ensembl.info/

-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://mail.ensembl.org/pipermail/dev_ensembl.org/attachments/20120620/6871dbb8/attachment.html>

More information about the Dev mailing list