[ensembl-dev] VEP 2.6 update?

[Will McLaren]

Hi Duarte,

We are looking into how we might leverage the Ensembl Compara
alignments to produce SIFT scores for non-human species, but this is
in development and we have no concrete plans or dates regarding this.

Cheers

Will

On 17 July 2012 14:15, Duarte Molha <Duarte.Molha at ogt.co.uk> wrote:
> Thanks Will
>
> Can't wait to get my hands on the new build :-)
>
> BTW... are you guys considering adding sift and polyphen scores to the mouse genome or that is not on your the near-term plans?
>
> Cheers
>
> Duarte
>
>
> -----Original Message-----
> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On Behalf Of Will McLaren
> Sent: 17 July 2012 13:57
> To: Ensembl developers list
> Subject: Re: [ensembl-dev] VEP 2.6 update?
>
> Hi Duarte,
>
> Thanks for spotting this - the link from our tools page is going to the HEAD area of our CVS tree instead of the 68 branch.
>
> The latest stable version will always be available from http://www.ensembl.org/info/docs/variation/vep/vep_script.html#download
>
> Cheers
>
> Will
>
> On 17 July 2012 13:51, Duarte Molha <Duarte.Molha at ogt.co.uk> wrote:
>> Ok Will.
>>
>> It is just that when you download it from the website you are given the 2.6 version but the documentation does not reflect that. Can I run this 2.6 version on the current ensembl 67?
>>
>> Best regards
>>
>> Duarte
>>
>>
>> -----Original Message-----
>> From: dev-bounces at ensembl.org [mailto:dev-bounces at ensembl.org] On
>> Behalf Of Will McLaren
>> Sent: 17 July 2012 13:46
>> To: Ensembl developers list
>> Subject: Re: [ensembl-dev] VEP 2.6 update?
>>
>> Hi Duarte,
>>
>> The next version of VEP will be released alongside Ensembl v68, which is due in the next few weeks.
>>
>> If you subscribe to announce at ensembl.org you will get emails announcing release dates etc.
>>
>> Cheers
>>
>> Will
>>
>> On 17 July 2012 13:41, Duarte Molha <Duarte.Molha at ogt.co.uk> wrote:
>>> Dear Devs.
>>>
>>>
>>>
>>> I just downloaded the latest variant_effect_predictor but on your
>>> website the latest version documented is 2.5.
>>>
>>>
>>>
>>> When are you updating the site to reflect the latest changes and
>>> where can I get the latest cache files with 1000 genomes MAF?
>>>
>>>
>>>
>>> Best regards,
>>>
>>>
>>>
>>> Duarte Molha
>>>
>>>
>>>
>>>
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>>
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>
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