[ensembl-dev] CpG Island

[Yuan Chen]

Thank very much, Susan.

In the simple_feature table for cpg, there is score column, the maximum score is 34968 and minimum score is 37, do you know the meaning of this score ? 

yuan
On 11 Jan 2012, at 09:28, Susan Fairley wrote:

> Hi Yuan,
> 
> The CpG islands are stored as simple features in the human core database. Their analysis has the logic_name cpg.
> 
> homo_sapiens_core_65_37 >select logic_name , count(*) from analysis, simple_feature where analysis.analysis_id =simple_feature.analysis_id group by logic_name ;
> +------------+----------+
> | logic_name | count(*) |
> +------------+----------+
> | cpg        |    23511 |
> | eponine    |    62774 |
> | firstef    |    89002 |
> | trnascan   |      834 |
> +------------+----------+
> 4 rows in set (0.36 sec)
> 
> Kind regards,
> Susan.
> 
> Yuan Chen wrote:
>> Hi All,
>> Do ENSEMBL have CpG island data on human available some where ?  Cheers
>> yuan
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