[ensembl-dev] How to get 3'UTRs of D. virilis

Daniel Lawson lawson at ebi.ac.uk
Thu Feb 16 20:19:58 GMT 2012

Dear Sergei,

The other drosopholids are part of Ensembl Genomes and you can use the same
scripts/mart queries to get UTRs or flanking sequences from them.

See metazoa.ensembl.org.


On 16 February 2012 19:53, Sergei Manakov <manakov at ebi.ac.uk> wrote:

> Hello,
> I Drosophila melanogaster is in the core Ensembl, so it is
> straightforward to get it's UTRs (both positions, sequences and gene
> names).
> But what about other Drosophilas (I am interested in D. virilis): they
> are not in the core Ensembl, maybe they are in compara? If so, does
> somebody perhaps already have a script that fetches UTRs of other
> Drosophilas? This would be very much appreciated!
> thanks,
> Sergei
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