[ensembl-dev] adding karyotype bands, but API doesn't find them
jhumphre at ebi.ac.uk
Thu Apr 19 13:12:16 BST 2012
That solves it! It works.
On 19/04/2012 12:46, Stephen Trevanion wrote:
> Hi Jay,
> Do you have a meta_coord table entry ?
> On 04/19/12 12:31, Jay Humphrey wrote:
>> I have added data in the karyotype table, but the Genome view doesn't
>> show my bands. This is for a non-vertebrate in Ensembl Genomes. The
>> rendering code loads a Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor for
>> the chromosome, then $kba->fetch_all_by_chr_name($chr); returns no
>> bands. I have one row in the table, with an arbitrary 'band'='q1', a
>> valid seq_region_id/start/end, and a 'stain' (color) of 'gvar', the
>> same as q12 on Human chr Y (colors are defined in
>> conf/ini-files/COLOUR.ini). What is missing?
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Jay Humphrey Ensembl Genomes Web Developer
EMBL-EBI Tel: +44-(0)1223-492682
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
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