[ensembl-dev] adding karyotype bands, but API doesn't find them

Jay Humphrey jhumphre at ebi.ac.uk
Thu Apr 19 13:12:16 BST 2012

That solves it!  It works.
Thanks Steve!

On 19/04/2012 12:46, Stephen Trevanion wrote:
> Hi Jay,
> Do you have a meta_coord table entry ?
> Steve
> On 04/19/12 12:31, Jay Humphrey wrote:
>> I have added data in the karyotype table, but the Genome view doesn't 
>> show my bands.  This is for a non-vertebrate in Ensembl Genomes.  The 
>> rendering code loads a Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor for 
>> the chromosome, then $kba->fetch_all_by_chr_name($chr); returns no 
>> bands.  I have one row in the table, with an arbitrary 'band'='q1', a 
>> valid seq_region_id/start/end, and a 'stain' (color) of 'gvar', the 
>> same as q12 on Human chr Y (colors are defined in 
>> conf/ini-files/COLOUR.ini).  What is missing?
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Jay Humphrey                   Ensembl Genomes Web Developer
EMBL-EBI                       Tel: +44-(0)1223-492682
Wellcome Trust Genome Campus   Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK         http://www.ensemblgenomes.org/

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