[ensembl-dev] adding karyotype bands, but API doesn't find them

Stephen Trevanion st3 at sanger.ac.uk
Thu Apr 19 12:46:49 BST 2012

Hi Jay,

Do you have a meta_coord table entry ?


On 04/19/12 12:31, Jay Humphrey wrote:
> I have added data in the karyotype table, but the Genome view doesn't 
> show my bands.  This is for a non-vertebrate in Ensembl Genomes.  The 
> rendering code loads a Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor for 
> the chromosome, then $kba->fetch_all_by_chr_name($chr); returns no 
> bands.  I have one row in the table, with an arbitrary 'band'='q1', a 
> valid seq_region_id/start/end, and a 'stain' (color) of 'gvar', the 
> same as q12 on Human chr Y (colors are defined in 
> conf/ini-files/COLOUR.ini).  What is missing?

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