[ensembl-dev] adding karyotype bands, but API doesn't find them
st3 at sanger.ac.uk
Thu Apr 19 12:46:49 BST 2012
Do you have a meta_coord table entry ?
On 04/19/12 12:31, Jay Humphrey wrote:
> I have added data in the karyotype table, but the Genome view doesn't
> show my bands. This is for a non-vertebrate in Ensembl Genomes. The
> rendering code loads a Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor for
> the chromosome, then $kba->fetch_all_by_chr_name($chr); returns no
> bands. I have one row in the table, with an arbitrary 'band'='q1', a
> valid seq_region_id/start/end, and a 'stain' (color) of 'gvar', the
> same as q12 on Human chr Y (colors are defined in
> conf/ini-files/COLOUR.ini). What is missing?
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