[ensembl-dev] adding karyotype bands, but API doesn't find them
Jay Humphrey
jhumphre at ebi.ac.uk
Thu Apr 19 12:31:52 BST 2012
I have added data in the karyotype table, but the Genome view doesn't
show my bands. This is for a non-vertebrate in Ensembl Genomes. The
rendering code loads a Bio::EnsEMBL::DBSQL::KaryotypeBandAdaptor for the
chromosome, then $kba->fetch_all_by_chr_name($chr); returns no bands. I
have one row in the table, with an arbitrary 'band'='q1', a valid
seq_region_id/start/end, and a 'stain' (color) of 'gvar', the same as
q12 on Human chr Y (colors are defined in conf/ini-files/COLOUR.ini).
What is missing?
--
Jay Humphrey Ensembl Genomes Web Developer
EMBL-EBI Tel: +44-(0)1223-492682
Wellcome Trust Genome Campus Fax: +44-(0)1223-494468
Cambridge CB10 1SD, UK http://www.ensemblgenomes.org/
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