[ensembl-dev] How to get a tree stable id ?

[Matthieu Muffato]

Hi

Maybe you are hitting a tree that does not have a stable id: either a 
ncRNA tree or a protein super-tree.

How do you retrieve the trees in the first place ?

Matthieu

On 18/04/12 14:15, Moretti Sébastien wrote:
> I can access $tree->tree->tree_type
> but $tree->tree->stable_id returns undef for all node_id I have tested
> (5 node_ids), for our local ensembl 66 db, or the one from
> ensembldb.ensembl.org.
>
>> Hi
>>
>> Sorry, my message was not clear. You only need $tree->tree->stable_id
>> with no "->tree()";
>>
>> Other tree_wide parameters are available, like $tree->tree->tree_type,
>> $tree->tree->method_link_species_set_id, etc
>>
>> Matthieu
>