[ensembl-dev] How to get a tree stable id ?
Matthieu Muffato
muffato at ebi.ac.uk
Wed Apr 18 14:24:15 BST 2012
Hi
Maybe you are hitting a tree that does not have a stable id: either a
ncRNA tree or a protein super-tree.
How do you retrieve the trees in the first place ?
Matthieu
On 18/04/12 14:15, Moretti Sébastien wrote:
> I can access $tree->tree->tree_type
> but $tree->tree->stable_id returns undef for all node_id I have tested
> (5 node_ids), for our local ensembl 66 db, or the one from
> ensembldb.ensembl.org.
>
>> Hi
>>
>> Sorry, my message was not clear. You only need $tree->tree->stable_id
>> with no "->tree()";
>>
>> Other tree_wide parameters are available, like $tree->tree->tree_type,
>> $tree->tree->method_link_species_set_id, etc
>>
>> Matthieu
>
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