[ensembl-dev] How to get a tree stable id ?

Moretti Sébastien sebastien.moretti at unil.ch
Wed Apr 18 14:15:17 BST 2012


I can access $tree->tree->tree_type
but $tree->tree->stable_id returns undef for all node_id I have tested 
(5 node_ids), for our local ensembl 66 db, or the one from 
ensembldb.ensembl.org.

> Hi
>
> Sorry, my message was not clear. You only need $tree->tree->stable_id
> with no "->tree()";
>
> Other tree_wide parameters are available, like $tree->tree->tree_type,
> $tree->tree->method_link_species_set_id, etc
>
> Matthieu

-- 
Sébastien Moretti
Department of Ecology and Evolution,
Biophore, University of Lausanne,
CH-1015 Lausanne, Switzerland
Tel.: +41 (21) 692 4221/4079
http://selectome.unil.ch/ http://bgee.unil.ch/




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