[ensembl-dev] Ensembl with Human Patches Question
sf7 at sanger.ac.uk
Wed Apr 4 14:42:17 BST 2012
We align human ESTs to the primary chromosomes as part of the build for
the primary assembly.
For the patches, we use a different 'lightweight' process, which does
not include aligning ESTs. Consequently, we have no EST alignments to
the patches and don't display them on the website.
I hope that helps to explain things. Please let me know if you have any
Will Chow wrote:
> I'm not sure if this is a core code or a webcode thing, or perhaps I'm
> using this wrong, hence why I'm submitting this here and not one of the
> rt queues.
> This was found via the ensembl browser specifically involving the human
> patches. For example the first patch on chr 1.
> Turning on the Human EST and marker Track:
> The track reveals the features under the clone AC114494.
> If I were to jump to the patched region via the assembly exceptions track.
> Under the same clone, AC114494, these features don't appear.
> I would've thought the features would appear here as well. Can someone
> shed some light on this?
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> Ensembl Blog: http://www.ensembl.info/
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