[ensembl-dev] Configured BAM and VCF sources

[Fedor Gusev]

Hmm... This does not help.

And I notice that load_configured_bam is not called from anywhere in
the code. Is this ok?

On Wed, Sep 28, 2011 at 5:14 PM, Nick Langridge <nickl at ebi.ac.uk> wrote:
> Hi Fedor,
>
> Below is a configured BAM example. Note also that you should remove
> eg-plugins/bam (if you are still using it) this is no longer required - the
> BAM code has been integrated with Ensembl webcode.
>
> [ENSEMBL_INTERNAL_BAM_SOURCES]
> Puccinia_triticina_SRR035315 = regulation
>
> [Puccinia_triticina_SRR035315]
> source_name        = Transcriptomics sequencing on Puccinia triticina
> description        = RNA-Seq study.
> source_url         = /path/to/bam/files/SRR035315_GG705475.bam
> source_type        = rnaseq
> display            = normal
>
>
> Cheers,
> Nick
>
> On 28/09/2011 13:29, Fedor Gusev wrote:
>>
>> Hello everyone!
>>
>> Can someone provide and example on adding configured BAM and VCF sources?
>>
>> We had some BAMs attached on release 61 installation, but after
>> upgrading to release 63 they are not displayed anymore. It seems like
>> configuration should be changed (at least name ->  source_name and url
>> ->  source_url). If so, what is the new syntax for those?
>>
>>
>
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-- 
Kind regards,
Fedor Gusev.