[ensembl-dev] Configured BAM and VCF sources

[Nick Langridge]

Hi Fedor,

Below is a configured BAM example. Note also that you should remove 
eg-plugins/bam (if you are still using it) this is no longer required - 
the BAM code has been integrated with Ensembl webcode.

[ENSEMBL_INTERNAL_BAM_SOURCES]
Puccinia_triticina_SRR035315 = regulation

[Puccinia_triticina_SRR035315]
source_name        = Transcriptomics sequencing on Puccinia triticina
description        = RNA-Seq study.
source_url         = /path/to/bam/files/SRR035315_GG705475.bam
source_type        = rnaseq
display            = normal


Cheers,
Nick

On 28/09/2011 13:29, Fedor Gusev wrote:
> Hello everyone!
>
> Can someone provide and example on adding configured BAM and VCF sources?
>
> We had some BAMs attached on release 61 installation, but after
> upgrading to release 63 they are not displayed anymore. It seems like
> configuration should be changed (at least name ->  source_name and url
> ->  source_url). If so, what is the new syntax for those?
>
>