[ensembl-dev] Biomart configure error

[Rhoda Kinsella]

Hi Daniel
We currently use BioMart version 0.7 and our web team have had to make  
quite a few modifications to the code to integrate it with the Ensembl  
website so the version they are using does not resemble the checkout.  
I would recommend that you run your Biomart as a standalone service  
separate to your local Ensembl installation.
Regards
Rhoda


On 27 Sep 2011, at 12:11, 陈岗 wrote:

> Hi All
>
> I try to add Biomart into Ensembl local service,  already changed  
> the configure files, including Plugins.pm, martresults.PLS,  
> martservices.PLS, martview.PLS, settings.conf, Web.pm and copied  
> *.tt files to custom directory. Ensembl release 63, Biomart release  
> 0.6.
>
> When starts Ensembl, there is a error:
>
> Global symbol "$background_file_dir" requires explicit package name  
> at /usr/local/ensembl/biomart-perl/lib/BioMart/Web.pm line  
> 1983.\nGlobal symbol "$background_file_dir" requires explicit  
> package name at /usr/local/ensembl/biomart-perl/lib/BioMart/Web.pm  
> line 1984.\nCompilation failed in require at /usr/local/ensembl/conf/ 
> perl.startup line 58.\n\t(in cleanup) Global symbol  
> "$background_file_dir"  requires explicit package name at /usr/local/ 
> ensembl/biomart-perl/lib/BioMart/Web.pm line 1983.\nGlobal symbol  
> "$background_file_dir" requires explicit package name at /usr/local/ 
> ensembl/biomart-perl/lib/BioMart/Web.pm line 1984.\nCompilati on  
> failed in require at /usr/local/ensembl/conf/perl.startup line  
> 58.\nCompilati on failed in require at /usr/local/ensembl/conf/ 
> httpd.conf line 310.\n
>
> How to solve it ?
>
> Thanks million.
>
> Daniel
> -- 
> TILSI
> Taicang Institute for Life Science Information,China
>
>
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Rhoda Kinsella Ph.D.
Ensembl Bioinformatician,
European Bioinformatics Institute (EMBL-EBI),
Wellcome Trust Genome Campus,
Hinxton
Cambridge CB10 1SD,
UK.