[ensembl-dev] Variant Effect predictor error message

[Venturini Luca]

I would try using "human" as a species name, usually that functions. 
Also, set the verbose flag - if the connection to the database 
functions, you should see a list of all available species/dataset loaded 
from MySQL.

- Luca


Il 25/10/2011 16:38, Mark Aquino ha scritto:
> Hi,
>
> I'm getting this error:
>
> homo_sapiens is not a valid species name for this instance
> homo_sapiens is not a valid species name for this instance
> Use of uninitialized value $species in hash element at /users/maquino/src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 958.
> Use of uninitialized value $species in hash element at /users/maquino/src/ensembl/modules/Bio/EnsEMBL/Registry.pm line 969.
> ERROR: Could not connect to core database
>
> When I try to run the variant effect predictor.
>
> Is the core database still down and that's what's causing this error or is there something else going wrong here?
>
> -Mark
>
> _______________________________________________
> Dev mailing list    Dev at ensembl.org
> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
> Ensembl Blog: http://www.ensembl.info/