[ensembl-dev] Local installation

[Anne Parker]

Hi Jean-Pierre


On 18 Oct 2011, at 15:43, Gauthier Jean-Pierre wrote:

> Ok,
> 
> it looks like better, I created the 2 db and apache server now is running,
> but with an error message.

What is your Apache error message?

> I obtain the joint web page.
> I d'ont find where root try to connect.
> I also have other questions:
> What is the hierarchy between the differents conf files:
> ENSEMBL/conf/                                                                            SiteDefs.pm
>                           /ini-files/                                                               DEFAULTS.ini & MULTI.ini

Do not edit these files - they are base files that are overridden by the files in your plugin. Please see

http://www.ensembl.org/info/docs/webcode/code_intro.html#plugins

for an explanation of how plugins work.

> 
> ENSEMBL/public-plugins/mirror/conf/                                         SiteDefs.pm
>                                                              /ini-files/                             DEFAULTS.ini
> 
> and how to do for using buchnera_collection_core_11_64.

Configuring your own species is covered here:

http://www.ensembl.org/info/docs/webcode/species/index.html

Regards

Anne



> That's comming on....
> Jean-Pierre
> 
> 
> 
> 
> 
> Le 17/10/2011 16:14, Anne Parker a écrit :
>> Just to clarify
>> 
>> You need two databases:
>> 
>> buchnera_collection_core_11_64
>> ensembl_website_64
>> 
>> The first of these uses the Ensembl core schema and will have your data loaded into it, the second uses the ensembl_website schema and needs to have the ensembl_website_64 sql files loaded into it.
>> 
>> Hope this is clear
>> 
>> Regards
>> 
>> Anne
>> 
>> 
>> On 17 Oct 2011, at 14:52, Gauthier Jean-Pierre wrote:
>> 
>>> Le 17/10/2011 14:50, Anne Parker a écrit :
>>>> Hi Gaultier
>>>> 
>>>> Did you download and install the ensembl_website_64 database? It is needed for page help and similar non-genomic content.
>>>> 
>>>> Cheers
>>>> 
>>>> Anne
>>>> 
>>> No, I have populated this database whith
>>> /data/APPLIS/mysql -u ens_db_user -p ensembl_website_64<  buchnera_collection_core_11_64_1.sql
>>> /data/APPLIS/mysqlimport  -u ens_db_user -p ensembl_website_64 -L *.txt
>>> 
>>> Because I want to make a comparative database with buchnera genomes (public and private)
>>> I created ensembl_website_64 db because this db was needed (I d'ont know why..)
>>> 
>>> Need I to install  'ensembl_website_64 database' ?
>>> Jean-Pierre
>>> 
>>>> On 17 Oct 2011, at 13:48, Gauthier Jean-Pierre wrote:
>>>> 
>>>>> Hi,
>>>>> 
>>>>> I come back to you because I 'm retrying to make a local installation
>>>>> of Ensembl.
>>>>> When launching httpd, The error message is:
>>>>> /data/APPLIS/ENSEMBL/apache2/bin/httpd -d /data/APPLIS/ENSEMBL
>>>>> ..... see httpd_err.txt
>>>>> 
>>>>> Syntax error on line 36 of /data/APPLIS/ENSEMBL/conf/httpd.conf:
>>>>> DBD::mysql::db selectall_arrayref failed: Table 'ensembl_website_64.help_record' doesn't exist at /data/APPLIS/ENSEMBL/modules/EnsEMBL/Web/ConfigPacker.pm line 688.\n\t(in cleanup) DBD::mysql::db selectall_arrayref failed: Table 'ensembl_website_64.help_record' doesn't exist at /data/APPLIS/ENSEMBL/modules/EnsEMBL/Web/ConfigPacker.pm line 688.\nCompilation failed in require at /data/APPLIS/ENSEMBL/conf/httpd.conf line 313.\n
>>>>> root at compa:/home/gauthie#
>>>>> 
>>>>> What is wrong whith my installation?
>>>>> Thanks
>>>>> 
>>>>> 
>>>>> -- 
>>>>> Gauthier Jean-Pierre.
>>>>> Bio-informatique.
>>>>> INRA. UMR BIO3P.
>>>>> Domaine de la Motte. BP. 35327.
>>>>> 35653 LE RHEU CEDEX.
>>>>> tel  : 33(0)2.23.48.51.68
>>>>> fax  : 33(0)2.23.48.51.50
>>>>> mail : Jean-Pierre.Gauthier at rennes.inra.fr
>>>>> 
>>>>> <httpd_err.txt>_______________________________________________
>>>>> Dev mailing list    Dev at ensembl.org
>>>>> List admin (including subscribe/unsubscribe): http://lists.ensembl.org/mailman/listinfo/dev
>>>>> Ensembl Blog: http://www.ensembl.info/
>>>> Anne Parker
>>>> Ensembl Web Production Manager
>>>> http://www.ensembl.org
>>>> 
>>>> 
>>>> 
>>>> 
>>>> 
>>> 
>>> -- 
>>> Gauthier Jean-Pierre.
>>> Bio-informatique.
>>> INRA. UMR BIO3P.
>>> Domaine de la Motte. BP. 35327.
>>> 35653 LE RHEU CEDEX.
>>> tel  : 33(0)2.23.48.51.68
>>> fax  : 33(0)2.23.48.51.50
>>> mail : Jean-Pierre.Gauthier at rennes.inra.fr
>>> 
>>> 
>> Anne Parker
>> Ensembl Web Production Manager
>> http://www.ensembl.org
>> 
>> 
>> 
>> 
>> 
> 
> 
> -- 
> Gauthier Jean-Pierre.
> Bio-informatique.
> INRA. UMR BIO3P.
> Domaine de la Motte. BP. 35327.
> 35653 LE RHEU CEDEX.
> tel  : 33(0)2.23.48.51.68
> fax  : 33(0)2.23.48.51.50
> mail : Jean-Pierre.Gauthier at rennes.inra.fr
> 
> <ensembl_homep.jpg>

Anne Parker
Ensembl Web Production Manager
http://www.ensembl.org