[ensembl-dev] Mapping transcript coordinate to toplevel (genome)

[Dan Bolser]

On 10 November 2011 10:31, Sung Gong <sung at bio.cc> wrote:
> Hi,
>
> I wanted to convert transcript coordinates onto the top level using
> Bio::EnsEMBL::TranscriptMapper.

> It works very well, except only one position shown below:
> ENST00000155840 921 923
> which returns:
> chr:11  2604665  2604666
>
> I am wondering why the length is different (921-923 & 2604665-2604666)?
> Only one such a case out of more than 100 entries, which are OK.
>
> Any thoughts?

What does the assembly look like in this region?


> Cheers,
> Sung
>
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