[ensembl-dev] regulatory_region_variant

cj5 at sanger.ac.uk cj5 at sanger.ac.uk
Fri Nov 11 08:47:51 GMT 2011


Hi,
According to the documentation, the ensembl api provides
'regulatory_region_variant' predicted variation consequences.

http://www.ensembl.org/info/docs/variation/index.html

But I've had a look at some of our annotations from the VEP 2.2, ensembl
version 64, and not come across any instance of this. Is it not provided
by the VEP?

I noticed a posting about this in the dev archives which suggests that
since v62 we need to use VariationAdaptor for these annotation, but would
like to check.

http://lists.ensembl.org/pipermail/dev/2011-May/001243.html


Thanks
Chris






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